I run a big tackel box for all my misc gear,spoons,plugs ect. A few things I have been using that might help is a soft case cd holder, I use it to put all my pre-ties in. Helps keep them together and very acessable. The other thing to look at are the soft flasher bags made by Xtream. They save room and keep the flashers in good shape. During the summer if you stuff them in the box they get hot and warp, you might as well toss them at that point.I have a floor storage in my sea-ray where I store all my down rigger balls, helps to keep the spares out of the way. As for the net I use a small tie down to hold it along the rail of the boat and keeps it out of the way. Hope this helps.
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You don't catch fish, fishing catches you.